Hands on training on
Whole genome sequencing of bacterial genomes - tools and applications
Course Content -
General Principles of typing of bacteria
Surveillance of Antimicrobial Resistance using whole genome sequencing
Application of Genomic tools- One technology takes it all.
Introduction to Next-Generation sequencing (NGS)
De novo assembly- from raw reads to contigs: assembler tool description and application
Demonstration of analysis tools for species identification, MLST typing and finding resistance genes
Demonstration of analysis tools for Serotyping of Salmonella and Escherichia coli strains, and finding plasmid replicons
demonstration of analysis tools for multiple analyzes, phylogenetic tree building and finding genetic markers.
